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ALS News
Contents
Volume 239 • March 31, 2004
ALSNews is a monthly electronic newsletter to keep users and other interested parties informed about developments at the Advanced Light Source, a national user facility located at Lawrence Berkeley National Laboratory, University of California. We welcome suggestions for topics and content.
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Nanodiamonds show
buckyball surface

by Lori Tamura

If you blast a diamond into (nanosized) smithereens you will get... buckyball fragments? In fact, scientists from Lawrence Livermore National Laboratory have found that diamonds made up of up to a few hundred carbon atoms do not exhibit the smooth, faceted surfaces commonly associated with crystals. Instead, at this scale, portions of the diamond's surface will spontaneously buckle into the curved, geodesic-dome structure found in buckyballs. The researchers came to this surprising conclusion after performing ab initio calculations as well as x-ray absorption and emission experiments on nanodiamonds synthesized in detonation waves from high explosives. The discovery of this new family of carbon clusters, dubbed "bucky diamonds," may have implications for a wide range of areas, from astronomy, where diamonds are studied as a constituent of meteorites and interplanetary dust, to optoelectronics, where nanodiamonds might be used as photonic switches and tunable lasers. Full story.

Bucky Diamonds

Publication about this research: J.-Y. Raty, G. Galli, C. Bostedt, T.W. van Buuren, and L.J. Terminello, "Quantum Confinement and Fullerenelike Surface Reconstructions in Nanodiamonds," Phys. Rev. Lett. 90, 037401 (2003).

Contact: Lou Terminello, terminello@llnl.gov

Demonstration of coherent
x-ray diffraction imaging

by Art Robinson

In order to image the interiors of intrinsically noncrystalline objects with nanometer resolution, several groups have been developing the technique of coherent x-ray diffraction (or lensless) imaging; however, up until now they have required the use of additional image information to supplement the diffraction pattern. At the ALS, a collaboration comprising researchers from Lawrence Livermore National Laboratory, Arizona State University, and the ALS has demonstrated the ability to make two-dimensional images of clusters of gold balls 50 nm in diameter from diffraction data alone with a resolution of 20 nm. Full story.

Lensless Imaging

Publication about this research: S. Marchesini, H. He, H.N. Chapman, S.P. Hau-Riege, A. Noy, M. R. Howells, U. Weierstall, and J.C.H. Spence, "X-ray image reconstruction from a diffraction pattern alone," Phys. Rev. B 68, 140101(R) (2003).

Contact: Stefano Marchesini, marchesini@llnl.gov

Designing a novel
globular protein fold

by Art Robinson

A major challenge of computational structural biology has been to create, from scratch, new proteins with heretofore unobserved three-dimensional structures. A collaboration from the University of Washington, Seattle, the University of North Carolina, Chapel Hill, and the Fred Hutchinson Cancer Research Center has now developed and demonstrated a methodology for protein-structure prediction and design by creating the first artificial globular protein with a novel topology, a 93-residue protein called Top7. Significantly, the x-ray structure of Top7 agreed almost precisely with the structure specified by the computational model. Full story.

Dial A Protein

Publication about this research: B. Kuhlman, G. Dantas, G.C. Ireton, G. Varani, B.L. Stoddard, and D. Baker, "Design of a novel globular protein fold with atomic-level accuracy, " Science 302, 1364 (2003).

Contact: David Baker, dabaker@u.washington.edu

New x-ray microscope receives funding

Carolyn LarabellResearchers with Berkeley Lab and the University of California at San Francisco have received $2.5 million in grants to build a new x-ray microscope at the ALS. Users Carolyn Larabell and Mark Le Gros (both of Berkeley Lab) are the principal investigators. The first-of-its-kind microscope holds forth the promise of "cat scans" for biological cells and other unprecedented capabilities for cell and molecular biology studies. It also promises a better understanding of human diseases at the molecular level and possibly new discoveries for treating those diseases. Carolyn and Mark have been using XM-1, an existing x-ray microscope at Beamline 6.1.2, to demonstrate the potential of using this technology in cell and molecular biology studies. XM-1 was designed and is operated by the Center for X-Ray Optics primarily for the study of materials. The new microscope, dubbed XM-2, will be optimized for biology and will therefore have several advantages, including improved zone plates, the optic devices composed of nanometer-scale concentric metal rings that are used to focus x-rays for imaging purposes. Full story.

Contact: Carolyn Larabell, CALarabell@lbl.gov

UEC Corner: Notes from the Users'
Executive Committee

by Dennis Lindle

Dennis Lindle The UEC met for the first time this year on March 2. For the uninitiated, a typical UEC meeting is an all-day affair during which we hear updates from the ALS administration and staff on user and facility issues running the gamut from big-picture topics (e.g. strategic planning, upgrading the ALS) to more focused, quality-of-life concerns (e.g. housing, parking). Aside from its primary role in advising the ALS leadership on behalf of the user community, the UEC is also responsible for planning the annual Users' Meeting, which will be held October 18–20 this year.

At our March 2 meeting, we discussed three topics of broader interest to the user community. (1) ALS Upgrades. The highest priority is to modify the ALS to operate in "top-off" mode, in which the ring current would be maintained at a near-constant 500 mA by small injections at brief intervals (seconds to minutes). The Accelerator Physics Group is currently working with beamline scientists and users to assess the impact of injecting electrons with beam available (an essential aspect of "top-off" mode) on various experiments around the ring. Operation in "top-off" mode is expected to begin in about three years. (2) Strategic Planning. Another high priority for the ALS is upgrading existing insertion devices and beamlines to take advantage of new scientific opportunities and technological advances. To optimally achieve this in a systematic fashion, the ALS has begun a strategic-planning exercise that will culminate in a DOE-sponsored review of the ALS about a year from now. ALS staff are in the midst of a series of retreats looking ahead 5–10 years in order to identify key opportunities. As part of this process, in about two months, there will be a joint ALS/UEC retreat to obtain users' perspectives. If you have recommendations for future scientific or technological developments at the ALS, please feel free to contact me or another member of the UEC. (3) User Support Building. This new building, which will replace Building 10 adjacent to the ALS, will address numerous space needs of the user community, including high-bay staging and more office space. Unfortunately, the expected start date for this project (FY 2005) has been delayed two years due to funding difficulties. The UEC is clearly disappointed with the delay, but we are committed to working with ALS and Berkeley Lab management, who are very supportive of the project, to minimize its time to completion. Please stay tuned for more news as these issues continue to unfold.

(Contact: Dennis Lindle, lindle@unlv.nevada.edu)

Apply now for2004–2005
doctoral fellowships

ALS domeThe ALS is offering several doctoral fellowships in residence for the 2004–2005 academic year. Through these fellowships, qualified graduate students will gain hands-on experience in the use of synchrotron radiation by performing a major part of their thesis work at the ALS. Applicants must be full-time Ph.D. students pursuing synchrotron-radiation-based research in the physical or biological sciences and have passed all qualifying or comprehensive verbal and written examinations. Individuals from underrepresented groups are encouraged to apply. The deadline for applying is May 1, 2004.

The fellowships include a one-year appointment (with the possibility of renewal) and a $16,000 annual stipend. Fellows will be matched with an on-site mentor (generally a beamline scientist) and have access to ALS resources, including beam time. Fellows are expected to present their results at a meeting or a seminar at the end of the fellowship year.
Read more.

Contact: Zahid Hussain, ZHussain@lbl.gov

Mezzanine construction completed,
shutdown plans set

Construction of the office build-out in the ALS mezzanine has been completed. Scientific Support Group members began moving into their new home in late March. The mezzanine is now completely built out with the exception of one space, which has already been designated as the future home the Chemical Dynamics Group's laser lab.

Planning for this year's shutdown is well underway and it is shaping up to be a very busy time. The ALS will shut down on April 26 for maintenance and installation. Following a brief beamline commissioning period, the ALS will reopen for user operations on June 10. Major work to be accomplished during the shutdown includes a complete survey and alignment of the storage ring, the replacement of the W16 wiggler in Sector 5 with a W11 insertion device (for a planned femtosecond beamline), replacement of the superbend cold heads, and installation of higher-order-mode dampers on third-harmonic cavities 1, 2, and 3.

We plan to take advantage of the long shutdown period to accomplish two facility projects as well. To accommodate the increased usage of liquid nitrogen at the ALS, a new and larger bulk storage tank will be installed. The old 2300-gallon tank will be replaced with a 6000-gallon tank. The increased size of the tank also necessitates a new foundation. A building column in Sector 4 will also be removed to make way for the new meV-resoution beamline (MERLIN).

Contact: Steve Rossi, SLRossi@lbl.gov

Publications needed by April 9 for
inclusion in Activity Report

If you have recently published any ALS-related work in a scientific journal, conference proceedings, or book chapter; completed a Ph.D. thesis; or received a patent based on work done at the ALS, please let us know by April 9 so that your work can be reported to the DOE as well as cited in the 2003 ALS Activity Report.

Simply go to the User Services Online Forms Web page. This works best if you use Netscape 6 or 7 or Microsoft Internet Explorer 5.0 or greater; otherwise, you will lose data if you hit the "Back" key. Be sure to first use the "Search for Publications" option, to see if your publications have been previously entered into our database by a collaborator. If you are one of our more prolific publishers or have a common last name, you can limit the search by initials, beamline, year published, or journal name. Then, please use the "Submit Publication Listings" option and enter the information requested. Most of the mandatory fields are required by DOE. The most important fields are "Title" and "Journal or Publication Name." If you don't know something, such as the specific page, or month published, please type n/a in the field. We'll attempt to track it down.

Your timely response will be greatly appreciated, as it is imperative that we accurately report the number of ALS-related publications to the DOE and that we include them in our annual Activity Report. Remember, if it's on your CV, and all or part of the work was done at the ALS, it should be in our database!

Contact: alsuser@lbl.gov

Nanodiamonds show buckyball surface

Demonstration of coherent x-ray diffraction imaging

Designing a novel globular protein fold

New x-ray microscope receives funding

UEC Corner: Notes from the Users' Executive Committee

Apply now for 2004–2005 doctoral fellowships

Mezzanine construction completed, shutdown plans set

Publications needed by April 9 for inclusion in Activity report

Operations

RING STATUS

SCHEDULES

For the user runs from February 24–March 28:

Beam reliability*: 92%

Completion**: 86%

There was a significant loss of time due to failure of some feedthroughs, which resulted in leaks in the vacuum. This occurred during the first week of two-bunch operation.

*Time delivered/time scheduled
**Percent of scheduled beam delivered without interruption

Requests for special operations use of the "scrubbing" shift should be sent to Jan Pusina (ALS-CR@lbl.gov, x4738) by 1:00 p.m. Friday.

The Accelerator Status Hotline at (510) 486-6766 (ext. 6766 from Lab phones) features a recorded message giving up-to-date information on the operational status of the accelerator.

More Info

To subscribe/unsubscribe, email ALSNews@lbl.gov.

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EDITORS
Lori Tamura
Art Robinson

DESIGNER
Greg Vierra

LBNL/PUB-889

This work was supported by the Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC03-765F00098. Disclaimer.